Can MageRewards be set-up with only certain web sites within one Magento installation?

MageRewards can work with multiple web-sites and be enabled for some websites and not others. As long as the setup is on different websites and not different store views or store groups. We have a guide for customizing MageRewards so that it only applies to the sites you want found here:  Setting up MageRewards with Multiple Websites.

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